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1

Biodiversity in model ecosystems, II: species assembly and food web structure

Ugo Bastolla, Michael Lässig, Susanna C. Manrubia, Angelo Valleriani

Journal:

Journal of Theoretical Biology

Year:

2005

Language:

english

File:

PDF, 257 KB

english, 2005

2

The Role of SufS Is Restricted to Fe–S Cluster Biosynthesis in Escherichia coli

Bühning, Martin, Valleriani, Angelo, Leimkühler, Silke

Journal:

Year:

2017

Language:

english

File:

PDF, 2.22 MB

english, 2017

3

Biodiversity in model ecosystems, I: coexistence conditions for competing species

Ugo Bastolla, Michael Lässig, Susanna C. Manrubia, Angelo Valleriani

Journal:

Journal of Theoretical Biology

Year:

2005

Language:

english

File:

PDF, 260 KB

english, 2005

4

Energy Conversion by Molecular Motors Coupled to

Reinhard Lipowsky, Steffen Liepelt, Angelo Valleriani

Journal:

Journal of Statistical Physics

Year:

2009

Language:

english

File:

PDF, 810 KB

english, 2009

5

Translation by Ribosomes with mRNA Degradation: Exclusion Processes on Aging Tracks

Apoorva Nagar, Angelo Valleriani, Reinhard Lipowsky

Journal:

Journal of Statistical Physics

Year:

2011

Language:

english

File:

PDF, 1016 KB

english, 2011

6

Can seeds predict their future? Germination strategies of density-regulated desert annuals

Katja Tielbörger, Angelo Valleriani

Journal:

Year:

2005

Language:

english

File:

PDF, 165 KB

english, 2005

7

Multilevel selection in a gradient

Angelo Valleriani, Torsten Meene

Journal:

Ecological Modelling

Year:

2007

Language:

english

File:

PDF, 322 KB

english, 2007

8

[Lecture Notes in Physics] Biological Evolution and Statistical Physics Volume 585 || Accounting for phylogenetic uncertainty in comparative studies of evolution and adaptation

Lässig, Michael, Valleriani, Angelo

Year:

2002

Language:

english

File:

PDF, 262 KB

english, 2002

9

[Lecture Notes in Physics] Biological Evolution and Statistical Physics Volume 585 || || Front_matter

Lässig, Michael, Valleriani, Angelo

Year:

2002

Language:

english

File:

PDF, 150 KB

english, 2002

10

[Lecture Notes in Physics] Biological Evolution and Statistical Physics Volume 585 || The‘ shape’ of phylogenies under simple random speciation models

Lässig, Michael, Valleriani, Angelo

Year:

2002

Language:

english

File:

PDF, 391 KB

english, 2002

11

[Lecture Notes in Physics] Biological Evolution and Statistical Physics Volume 585 || Food web structure and the evolution of ecological communities

Lässig, Michael, Valleriani, Angelo

Year:

2002

Language:

english

File:

PDF, 227 KB

english, 2002

12

Algebraic determination of the evolutionary stable germination fraction

Angelo Valleriani

Journal:

Theoretical Population Biology

Year:

2005

Language:

english

File:

PDF, 193 KB

english, 2005

13

Effect of age on germination of dormant seeds

Angelo Valleriani, Katja Tielbörger

Journal:

Theoretical Population Biology

Year:

2006

Language:

english

File:

PDF, 262 KB

english, 2006

14

Evolutionarily stable germination strategies with time-correlated yield

Angelo Valleriani

Journal:

Theoretical Population Biology

Year:

2006

Language:

english

File:

PDF, 176 KB

english, 2006

15

Single-molecule stochastic times in a reversible bimolecular reaction

Keller, Peter, Valleriani, Angelo

Journal:

The Journal of Chemical Physics

Year:

2012

Language:

english

File:

PDF, 642 KB

english, 2012

16

Effect of ribosome shielding on mRNA stability

Deneke, Carlus, Lipowsky, Reinhard, Valleriani, Angelo

Journal:

Physical Biology

Year:

2013

Language:

english

File:

PDF, 746 KB

english, 2013

17

[Lecture Notes in Physics] Biological Evolution and Statistical Physics Volume 585 || A testable genotype-phenotype map: modeling evolution of RNA molecules

Lässig, Michael, Valleriani, Angelo

Year:

2002

Language:

english

File:

PDF, 686 KB

english, 2002

18

A Quasi Random Walk to Model a Biological Transport Process

Keller, Peter, Rœlly, Sylvie, Valleriani, Angelo

Journal:

Methodology and Computing in Applied Probability

Year:

2015

Language:

english

File:

PDF, 685 KB

english, 2015

19

[Lecture Notes in Physics] Biological Evolution and Statistical Physics Volume 585 ||

Lässig, Michael, Valleriani, Angelo

Year:

2002

Language:

english

File:

PDF, 150 KB

english, 2002

20

Dependence of Protein Synthesis on TRNA Concentrations

Rudorf, Sophia, Valleriani, Angelo, Lipowsky, Reinhard

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 41 KB

english, 2013

21

Stochastic Kinetics on Networks: When Slow Is Fast

Li, Xin, Kolomeisky, Anatoly B., Valleriani, Angelo

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 334 KB

english, 2014

22

Self-organized criticality in deterministic systems with disorder

De Los Rios, Paolo, Valleriani, Angelo, Luis Vega, José

Journal:

Physical Review E

Year:

1998

Language:

english

File:

PDF, 167 KB

english, 1998

23

Asymptotic properties of degree-correlated scale-free networks

Menche, Jörg, Valleriani, Angelo, Lipowsky, Reinhard

Journal:

Physical Review E

Year:

2010

Language:

english

File:

PDF, 2.37 MB

english, 2010

24

Unveiling the hidden structure of complex stochastic biochemical networks

Valleriani, Angelo, Li, Xin, Kolomeisky, Anatoly B.

Journal:

The Journal of Chemical Physics

Year:

2014

Language:

english

File:

PDF, 769 KB

english, 2014

25

Pathway structure determination in complex stochastic networks with non-exponential dwell times

Li, Xin, Kolomeisky, Anatoly B., Valleriani, Angelo

Journal:

The Journal of Chemical Physics

Year:

2014

Language:

english

File:

PDF, 893 KB

english, 2014

26

Length-dependent translation of messenger RNA by ribosomes

Valleriani, Angelo, Zhang, Gong, Nagar, Apoorva, Ignatova, Zoya, Lipowsky, Reinhard

Journal:

Physical Review E

Year:

2011

Language:

english

File:

PDF, 304 KB

english, 2011

27

Sequences of phase transitions in Ising models on correlated networks

Menche, Jörg, Valleriani, Angelo, Lipowsky, Reinhard

Journal:

Physical Review E

Year:

2011

Language:

english

File:

PDF, 494 KB

english, 2011

28

Power-law behavior in a nonextremal Bak-Sneppen model

Cafiero, Raffaele, De Los Rios, Paolo, Dittes, Frank-Michael, Valleriani, Angelo, Vega, José Luis

Journal:

Physical Review E

Year:

1998

Language:

english

File:

PDF, 298 KB

english, 1998

29

Shape of Ecological Networks

Lässig, Michael, Bastolla, Ugo, Manrubia, Susanna C., Valleriani, Angelo

Journal:

Physical Review Letters

Year:

2001

Language:

english

File:

PDF, 95 KB

english, 2001

30

Self-organized criticality driven by deterministic rules

De Los Rios, Paolo, Valleriani, Angelo, Vega, José Luis

Journal:

Physical Review E

Year:

1997

Language:

english

File:

PDF, 83 KB

english, 1997

31

[Lecture Notes in Physics] Biological Evolution and Statistical Physics Volume 585 || Principles of cophylogenetic maps

Lässig, Michael, Valleriani, Angelo

Year:

2002

Language:

english

File:

PDF, 438 KB

english, 2002

32

[Lecture Notes in Physics] Biological Evolution and Statistical Physics Volume 585 || Fitness landscapes

Lässig, Michael, Valleriani, Angelo

Year:

2002

Language:

english

File:

PDF, 406 KB

english, 2002

33

ACTIVE BIO-SYSTEMS: FROM SINGLE MOTOR MOLECULES TO COOPERATIVE CARGO TRANSPORT

LIPOWSKY, REINHARD, BEEG, JANINA, DIMOVA, RUMIANA, KLUMPP, STEFAN, LIEPELT, STEFFEN, MÜLLER, MELANIE J. I., VALLERIANI, ANGELO

Journal:

Biophysical Reviews and Letters

Year:

2009

Language:

english

File:

PDF, 3.86 MB

english, 2009

34

Editorial: "ACTIVE BIOMIMETIC SYSTEMS: FORCE GENERATION AND CARGO TRANSPORT BY MOLECULAR MACHINES"

LIPOWSKY, REINHARD, VALLERIANI, ANGELO

Journal:

Biophysical Reviews and Letters

Year:

2009

Language:

english

File:

PDF, 76 KB

english, 2009

35

On Time Duality for Markov Chains

Keller, Peter, Rœlly, Sylvie, Valleriani, Angelo

Journal:

Stochastic Models

Year:

2015

Language:

english

File:

PDF, 283 KB

english, 2015

36

Weak correlation of starch and volume in synchronized photosynthetic cells

Rading, M. Michael, Sandmann, Michael, Steup, Martin, Chiarugi, Davide, Valleriani, Angelo

Journal:

Physical Review E

Year:

2015

Language:

english

File:

PDF, 7.26 MB

english, 2015

37

Damage spreading in the Bak-Sneppen model

Valleriani, Angelo, Vega, José Luis

Journal:

Journal of Physics A: Mathematical and General Physics

Year:

1999

Language:

english

File:

PDF, 147 KB

english, 1999

38

Quantitative assessment of ribosome drop-off in E. coli

Sin, Celine, Chiarugi, Davide, Valleriani, Angelo

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 296 KB

english, 2016

39

Single-molecule modeling of mRNA degradation by miRNA: Lessons from data

Sin, Celine, Chiarugi, Davide, Valleriani, Angelo

Journal:

BMC Systems Biology

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

40

Can Seeds Predict Their Future? Germination Strategies of Density-Regulated Desert Annuals

Katja Tielbörger, Angelo Valleriani and Ove Eriksson

Journal:

Year:

2005

Language:

english

File:

PDF, 1.53 MB

english, 2005

41

A conditional likelihood is required to estimate the selection coefficient in ancient DNA

Valleriani, Angelo

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 388 KB

english, 2016

42

Predict or classify: The deceptive role of time-locking in brain signal classification

Rusconi, Marco, Valleriani, Angelo

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 801 KB

english, 2016

43

Circular analysis in complex stochastic systems

Valleriani, Angelo

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 492 KB

english, 2016

44

Analyzing the spatial positioning of nuclei in polynuclear giant cells

Stange, Maike, Hintsche, Marius, Sachse, Kirsten, Gerhardt, Matthias, Valleriani, Angelo, Beta, Carsten

Journal:

Journal of Physics D Applied Physics

Year:

2017

Language:

english

File:

PDF, 949 KB

english, 2017

45

Complex Degradation Processes Lead to Non-Exponential Decay Patterns and Age-Dependent Decay Rates of Messenger RNA

Deneke, Carlus, Lipowsky, Reinhard, Valleriani, Angelo, Tsimring, Lev

Journal:

Year:

2013

Language:

english

File:

PDF, 682 KB

english, 2013

46

Goodness of fit testing in dynamic single-molecule force spectroscopy

Bergues-Pupo, Ana E., Goktas, Melis, Tunn, Isabell, Lopez-Garcia, Patricia, Vila Verde, Ana, Blank, Kerstin G., Valleriani, Angelo

Journal:

The Journal of Chemical Physics

Year:

2018

Language:

english

File:

PDF, 547 KB

english, 2018

47

Time-resolved DNA release from an O-antigen specific Salmonella bacteriophage with a contractile tail

Broeker, Nina K., Roske, Yvette, Valleriani, Angelo, Stephan, Mareike S., Andres, Dorothee, Koetz, Joachim, Heinemann, Udo, Barbirz, Stefanie

Journal:

Journal of Biological Chemistry

Year:

2019

Language:

english

File:

PDF, 859 KB

english, 2019

48

Critical Steps of Plasmodium falciparum Ookinete Maturation

Siciliano, Giulia, Costa, Giulia, SuÃ¡rez-CortÃ©s, Pablo, Valleriani, Angelo, Alano, Pietro, Levashina, Elena A.

Journal:

Frontiers in Microbiology

Year:

2020

File:

PDF, 2.59 MB

2020

49

A high-affinity antibody against the CSP N-terminal domain lacks Plasmodium falciparum inhibitory activity

Thai, Elaine, Costa, Giulia, Weyrich, Anna, Murugan, Rajagopal, Oyen, David, Flores-Garcia, Yevel, Prieto, Katherine, Bosch, Alexandre, Valleriani, Angelo, Wu, Nicholas C., Pholcharee, Tossapol, Scall

Journal:

Journal of Experimental Medicine

Year:

2020

File:

PDF, 3.75 MB

2020